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Nebuilder Hifi Dna Assembly, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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New England Biolabs puc19 r
Determination of CcCas9 PAM sequence using plasmid transformation interference screening. ( A ) A scheme of the bacterial interference screen experiment. Escherichia coli cells carrying the CcCas9 locus were transformed by <t>PUC19-based</t> library carrying the protospacer sequence flanked by seven randomized nucleotides and plated on ampicillin containing plates. The presence of an interference-proficient PAM decreases the frequency of plasmids with this PAM among ampicillin-resistant colonies. Comparison of PAM representation in CcCas9 locus carrying cells and in control cells without the CcCas9 locus reveals depleted PAM sequences and allows one to deduce the PAM consensus. ( B ) Clostridium cellulolyticum CRISPR–Cas Type II-C system PAM sequence logo determined by plasmid transformation interference screening.
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Determination of CcCas9 PAM sequence using plasmid transformation interference screening. ( A ) A scheme of the bacterial interference screen experiment. Escherichia coli cells carrying the CcCas9 locus were transformed by <t>PUC19-based</t> library carrying the protospacer sequence flanked by seven randomized nucleotides and plated on ampicillin containing plates. The presence of an interference-proficient PAM decreases the frequency of plasmids with this PAM among ampicillin-resistant colonies. Comparison of PAM representation in CcCas9 locus carrying cells and in control cells without the CcCas9 locus reveals depleted PAM sequences and allows one to deduce the PAM consensus. ( B ) Clostridium cellulolyticum CRISPR–Cas Type II-C system PAM sequence logo determined by plasmid transformation interference screening.
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Promega commercial assay or kit fugene 6 transfection reagent
Determination of CcCas9 PAM sequence using plasmid transformation interference screening. ( A ) A scheme of the bacterial interference screen experiment. Escherichia coli cells carrying the CcCas9 locus were transformed by <t>PUC19-based</t> library carrying the protospacer sequence flanked by seven randomized nucleotides and plated on ampicillin containing plates. The presence of an interference-proficient PAM decreases the frequency of plasmids with this PAM among ampicillin-resistant colonies. Comparison of PAM representation in CcCas9 locus carrying cells and in control cells without the CcCas9 locus reveals depleted PAM sequences and allows one to deduce the PAM consensus. ( B ) Clostridium cellulolyticum CRISPR–Cas Type II-C system PAM sequence logo determined by plasmid transformation interference screening.
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Determination of CcCas9 PAM sequence using plasmid transformation interference screening. ( A ) A scheme of the bacterial interference screen experiment. Escherichia coli cells carrying the CcCas9 locus were transformed by PUC19-based library carrying the protospacer sequence flanked by seven randomized nucleotides and plated on ampicillin containing plates. The presence of an interference-proficient PAM decreases the frequency of plasmids with this PAM among ampicillin-resistant colonies. Comparison of PAM representation in CcCas9 locus carrying cells and in control cells without the CcCas9 locus reveals depleted PAM sequences and allows one to deduce the PAM consensus. ( B ) Clostridium cellulolyticum CRISPR–Cas Type II-C system PAM sequence logo determined by plasmid transformation interference screening.

Journal: Nucleic Acids Research

Article Title: DNA targeting by Clostridium cellulolyticum CRISPR–Cas9 Type II-C system

doi: 10.1093/nar/gkz1225

Figure Lengend Snippet: Determination of CcCas9 PAM sequence using plasmid transformation interference screening. ( A ) A scheme of the bacterial interference screen experiment. Escherichia coli cells carrying the CcCas9 locus were transformed by PUC19-based library carrying the protospacer sequence flanked by seven randomized nucleotides and plated on ampicillin containing plates. The presence of an interference-proficient PAM decreases the frequency of plasmids with this PAM among ampicillin-resistant colonies. Comparison of PAM representation in CcCas9 locus carrying cells and in control cells without the CcCas9 locus reveals depleted PAM sequences and allows one to deduce the PAM consensus. ( B ) Clostridium cellulolyticum CRISPR–Cas Type II-C system PAM sequence logo determined by plasmid transformation interference screening.

Article Snippet: This fragment was assembled with PUC19 fragment synthesized through PCR using primers PUC19_F and PUC19_R by NEBuilder HiFi DNA Assembly Cloning Kit (NEB, E5520).

Techniques: Sequencing, Plasmid Preparation, Transformation Assay, CRISPR